MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-24-o1

Family name MIR-24 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-24
Paralogues
Orthologues Dre-Mir-24-P1  Gmo-Mir-24-P1  Lch-Mir-24-P1  Loc-Mir-24-P1  Sto-Mir-24-P1  Tni-Mir-24-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046103.1: 7153250-7153310 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-o1)		 Mir-24-o1 NC_046103.1: 7153250-7153310 [-] UCSC Ensembl
Mir-27-o1 NC_046103.1: 7153880-7153942 [-] UCSC Ensembl
Mir-23-o1 NC_046103.1: 7155810-7155873 [-] UCSC Ensembl
Seed GGCUCAG
Precursor
(pre-Mir +30nt flank)		 
CCCCCCCCCCCCAUCUGGGCCGGAUCUUCUGUGCCUACUGUUCUGACAUCAGUCGUCUAUAAAAAGCACUGGCUCAGUUCAGCAGGAACAGAAGUCUCGUCCAUUGUCUGCCAUCCAUUCA
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Structure
        10          20        30        40        50        60
CCCCCCCCCCCCAUCUG--| C   AU       G   A   UU    CA     CGUCUA 
                   GG CGG  CUUCUGU CCU CUG  CUGA  UCAGU      U
                   CC GCU  GAAGACA GGA GAC  GACU  GGUCA      A
ACUUACCUACCGUCUGUUA^ U   CU       A   C   UU    C-     CGAAAA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-24-o1_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGUUCUGACAUCAGU -23
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Mature sequence

Pma-Mir-24-o1_3p
mirBase accessionMIMAT0019405
Sequence 
39- UGGCUCAGUUCAGCAGGAACAG -61
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