MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-24-2
Paralogues Dre-Mir-24-P1  Dre-Mir-24-P2a  Dre-Mir-24-P2b  Dre-Mir-24-P4a 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr3: 13412992-13413050 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3)		 Mir-23-P3 chr3: 13406243-13406303 [+] UCSC Ensembl
Mir-27-P3 chr3: 13406464-13406527 [+] UCSC Ensembl
Mir-24-P3 chr3: 13412992-13413050 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGUGUUCUCCUCUGUGGGCUGGUCUCCUGUGCCUGCUGUGCUGAUAAUCAGUGGACGGCUGUGACUGGCUCAGUUCAGCAGGAACAGGGGCCUGGUCUUCUCUCUGUGGGCUUUUCA
Get precursor sequence
Structure
        10          20        30        40        50          
UGUGUGUUCUCCUCUGU--|   UG U       G       U     UAA     GGACG 
                   GGGC  G CUCCUGU CCUGCUG GCUGA   UCAGU     \
                   UCUG  C GGGGACA GGACGAC UGACU   GGUCA     G
ACUUUUCGGGUGUCUCUCU^   GU C       A       U     C--     GUGUC 
       110       100        90        80          70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-24-P3_5p*
mirBase accessionNone
Sequence 
0- GUGCCUGCUGUGCUGAUAAUCAGU -24
Get sequence
Mature sequence

Dre-Mir-24-P3_3p
mirBase accessionMIMAT0001792
Sequence 
37- UGGCUCAGUUCAGCAGGAACAG -59
Get sequence
Proposed targets TargetScanFish: dre-miR-24