| MirGeneDB ID | Lch-Mir-23-P3 |
|---|---|
| Family name | MIR-23 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-23-P1 Lch-Mir-23-P2 Lch-Mir-23-P4 |
| Orthologues | Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126758.1: 380329-380387 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-23-P3) |
Mir-24-P3
JH126758.1: 373059-373117 [-]
Ensembl
Mir-27-P3 JH126758.1: 377934-377995 [-] Ensembl Mir-23-P3 JH126758.1: 380329-380387 [-] Ensembl |
| Seed | UCACAUU |
| Precursor (pre-Mir +30nt flank) |
UCUGUUGAAGCCGUUGUGCUGUUGUCAAUGGGGGUUCCUGGUAACGUGAUUUUAUAACACAAGUAGAAUCACAUUGCCAGGGAUUUCCAACUGAUAACAAGCAGUAAAUUCCUCAAGAGGet precursor sequence |
| Structure | 10 20 30 40 50 UCUGUUGAAGCCGUUGUGC- A-| GG C UAUAAC UGUUGUCA UGG GUUCCUGGUAA GUGAUUU \ ACAAUAGU ACC UAGGGACCGUU CACUAAG A GAGAACUCCUUAAAUGACGA CA^ UU A AUGAAC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Lch-Mir-23-P3_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGGUUCCUGGUAACGUGAUUU -22
Get sequence
|
| Mature sequence | Lch-Mir-23-P3_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AUCACAUUGCCAGGGAUUUCCA -59
Get sequence
|
