| MirGeneDB ID | Lch-Mir-23-P4 |
|---|---|
| Family name | MIR-23 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-23-P1 Lch-Mir-23-P2 Lch-Mir-23-P3 |
| Orthologues | Cmi-Mir-23-P4 Dre-Mir-23-P4a Gmo-Mir-23-P4a Loc-Mir-23-P4 Mal-Mir-23-P4a Sto-Mir-23-P4 Tni-Mir-23-P4a Xla-Mir-23-P4c Xla-Mir-23-P4d Xtr-Mir-23-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127091.1: 1154085-1154147 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-23-P4) |
Mir-24-P4
JH127091.1: 1152354-1152413 [-]
Ensembl
Mir-27-P4 JH127091.1: 1152893-1152956 [-] Ensembl Mir-23-P4 JH127091.1: 1154085-1154147 [-] Ensembl |
| Seed | UCACAUU |
| Precursor (pre-Mir +30nt flank) |
UUACUGGGUAUUCUUUGCUGGGACUGUUGGGGGUUCCCGGCACCGUGAUUUGUUGAGAAGAAAUUUUGAAAAUCACAUUGCCAGGGAUUUCCACAUAGUCACAGGACAACUCUUCACCCUGUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUACUGGGUAUUCUUUG-- G -| GG C CC GUUGAGAA CUG GACUGU UGG GUUCC GGCA GUGAUUU G GAC CUGAUA ACC UAGGG CCGU CACUAAA A AUGUCCCACUUCUCAACAG A C^ UU A UA AGUUUUAA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-23-P4_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGUUCCCGGCACCGUGAUUU -21
Get sequence
|
| Mature sequence | Lch-Mir-23-P4_3p (predicted) |
| mirBase accession | None |
| Sequence |
41- AUCACAUUGCCAGGGAUUUCCA -63
Get sequence
|
