MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-23-P4

Family name MIR-23 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-23-P2  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b 
Orthologues Dre-Mir-23-P4a  Gmo-Mir-23-P4a  Lch-Mir-23-P4  Loc-Mir-23-P4  Mal-Mir-23-P4a  Sto-Mir-23-P4  Tni-Mir-23-P4a  Xla-Mir-23-P4c  Xla-Mir-23-P4d  Xtr-Mir-23-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635918.1: 1564922-1564986 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P4)		 Mir-23-P4 KI635918.1: 1564922-1564986 [+] UCSC Ensembl
Mir-27-P4 KI635918.1: 1565842-1565904 [+] UCSC Ensembl
Seed UCACAUU
Precursor
(pre-Mir +30nt flank)		 
UCUUUUUCUCCCCCUUUGCUGUGGCUGUGAGGUGUUCUUGUCAUUGUGAUUUGAGGCUAAAAUCACUGAGAAAUCACAUUGCCAGGGAUUCCCAUACAGCCCCAGACCAGACCAGCCAUCACUGA
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Structure
        10          20        30         40        50        60 
UCUUUUUCUCCCCCUUUG--   U       A  U-|      U  U        GAGGCUAA 
                    CUG GGCUGUG GG  GUUCUUG CA UGUGAUUU        A
                    GAC CCGACAU CC  UAGGGAC GU ACACUAAA        A
AGUCACUACCGACCAGACCA   C       A  CU^      C  U        GAGUCACU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-23-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUGUUCUUGUCAUUGUGAUUU -22
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Mature sequence

Cmi-Mir-23-P4_3p
mirBase accessionNone
Sequence 
42- AUCACAUUGCCAGGGAUUCCCAU -65
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