Mir-23-P4

MirGeneDB ID

Xtr-Mir-23-P4

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-23a-2

Paralogues

Xtr-Mir-23-P2 Xtr-Mir-23-P3

Orthologues

Cmi-Mir-23-P4 Dre-Mir-23-P4a Gmo-Mir-23-P4a Lch-Mir-23-P4 Loc-Mir-23-P4 Mal-Mir-23-P4a Sto-Mir-23-P4 Tni-Mir-23-P4a Xla-Mir-23-P4c Xla-Mir-23-P4d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr4: 73605123-73605184 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P4)

Mir-23-P4 chr4: 73605123-73605184 [+] UCSC Ensembl
Mir-27-P4 chr4: 73605412-73605473 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGACUCUAUUUUUCACUCUGUGGCUGGUAGGAUUCCUGGCAGAGUGAUUUGGAAAUGUAUGGUACAAAAUCACAUUGCCAGGGAUUUCCAAUCAGUCCCGGGCCAAUCAUCCUCCUCUUGC

Get precursor sequence

Structure

        10          20        30          40        50         
GUGACUCUAUUUUUCAC--    U       A   --|         A       GGAAAUG 
                   UCUG GGCUGGU GGA  UUCCUGGCAG GUGAUUU       U
                   GGGC CUGACUA CCU  AGGGACCGUU CACUAAA       A
CGUUCUCCUCCUACUAACC    C       A   UU^         A       ACAUGGU 
120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Em	Em	Em	Em	He

Star sequence

Xtr-Mir-23-P4_5p*

mirBase accession

None

Sequence

0- GGAUUCCUGGCAGAGUGAUUU -21

Get sequence

Mature sequence

Xtr-Mir-23-P4_3p

mirBase accession

MIMAT0003568

Sequence

39- AUCACAUUGCCAGGGAUUUCCAA -62

Get sequence

Proposed targets

TargetScanVert: xtr-miR-23a