MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-27-P1  Lch-Mir-27-P2  Lch-Mir-27-P4 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126758.1: 377934-377995 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUCUGUCAGUUCUCAGCCUUAUCGGUGCAGGGCUUAGCUUACCUGUGAACAGUUAAAUAGACCUUGUUGUUCACAGUGGCUAAGUUCCGCAUCUCUGGGGCAAAGCACUAACAGUUUAAA
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Structure
        10          20        30        40        50        60 
AAAUCUGUCAGUUCUCA--|     UC     A          UAC         GUUAAAU 
                   GCCUUA  GGUGC GGGCUUAGCU   CUGUGAACA       A
                   CGGGGU  CUACG CUUGAAUCGG   GACACUUGU       G
AAAUUUGACAAUCACGAAA^     CU     C          U--         UGUUCCA 
120       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-27-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGGCUUAGCUUACCUGUGAACA -23
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Mature sequence

Lch-Mir-27-P3_3p (predicted)

mirBase accessionNone
Sequence
41- UUCACAGUGGCUAAGUUCCGC -62
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