MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-27-P3

Family name MIR-27 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Eca-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015175453.1: 135915-135976 [-]
Clustered miRNAs
(< 50kb from Mir-27-P3)		 Mir-24-P3 NW_015175453.1: 135655-135714 [-]
Mir-27-P3 NW_015175453.1: 135915-135976 [-]
Mir-23-P3 NW_015175453.1: 136216-136276 [-]
Seed UCACAGU
Precursor
(pre-Mir +30nt flank)		 
CGGGGAGCCCUCCUUCCGACGGCGAGGGACAGGGCUUGGUCCACCUGUGAACAGCGUGUGGCUCUGCCGUGUUCACAGUGGCUAAGUUCCGCCUCUUGCCGCCCGCUCUCCCCCCGCCGCCG
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Structure
        10          20         30        40        50        60 
CGGGGAGCCCUCCUUCCGA--       -| ACA        U    C        GCGUGUG 
                     CGGCGAG GG   GGGCUUGG CCAC UGUGAACA       G
                     GCCGUUC CC   CUUGAAUC GGUG ACACUUGU       C
GCCGCCGCCCCCCUCUCGCCC       U^ GC-        -    -        GCCGUCU 
120       110       100        90          80         70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-27-P3_5p*
mirBase accessionNone
Sequence 
0- AGGGCUUGGUCCACCUGUGAACA -23
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Mature sequence

Gja-Mir-27-P3_3p
mirBase accessionNone
Sequence 
41- UUCACAGUGGCUAAGUUCCGC -62
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