MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-27a
Paralogues Cfa-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr20: 48620555-48620616 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3)
Mir-181-P2c chr20: 48593159-48593221 [-] UCSC Ensembl
Mir-181-P1c chr20: 48593343-48593403 [-] UCSC Ensembl
Mir-23-P3 chr20: 48620332-48620390 [+] UCSC Ensembl
Mir-27-P3 chr20: 48620555-48620616 [+] UCSC Ensembl
Mir-24-P3 chr20: 48620685-48620744 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCUGCUGUCUUCGUCUGGCCUGGGGAGCAGGGCUUAGCUGCUUGUGAGCAGAGUCCACACCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCGGGACCCCGCCUCCUCUGGCUCUGC
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Structure
        10         20         30        40        50        60 
CCCCUGCUGUCUUCGUCU-  -|      A  A         UG  U       GAGUCCAC 
                   GG CCUGGGG GC GGGCUUAGC  CU GUGAGCA        \
                   CC GGGCCCC CG CUUGAAUCG  GA CACUUGU        A
CGUCUCGGUCUCCUCCGCC  A^      C  C         GU  -       GCUGAACC 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-27-P3_5p*

mirBase accessionNone
Sequence
0- AGGGCUUAGCUGCUUGUGAGCA -22
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Mature sequence

Cfa-Mir-27-P3_3p

mirBase accessionMIMAT0006641
Sequence
41- UUCACAGUGGCUAAGUUCCGC -62
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Proposed targets TargetScanVert: cfa-miR-27a
miRDB: MIMAT0006641