Mir-181-P2c

MirGeneDB ID

Cfa-Mir-181-P2c

Family name

MIR-181 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-181d

Paralogues

Cfa-Mir-181-P1a Cfa-Mir-181-P1b Cfa-Mir-181-P1c Cfa-Mir-181-P2a Cfa-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr20: 48593159-48593221 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2c)

Mir-181-P2c chr20: 48593159-48593221 [-] UCSC Ensembl
Mir-181-P1c chr20: 48593343-48593403 [-] UCSC Ensembl
Mir-23-P3 chr20: 48620332-48620390 [+] UCSC Ensembl
Mir-27-P3 chr20: 48620555-48620616 [+] UCSC Ensembl
Mir-24-P3 chr20: 48620685-48620744 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

CUCCAUUAGGCCACAGCGAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACGGAGGCCAGACCCACCGAGGGAUGAAUGUCACUGUGGCUGGGCCAGACAUAGCCUGAGGGG

Get precursor sequence

Structure

        10        20          30        40        50        60  
CUCCAUUAGGCCACAGCGAA--|      AUCA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       C
                      UCGGUGU    UGUAAGUAG G  AGCCACCCAG       G
GGGGAGUCCGAUACAGACCGGG^      CAC-         G --          ACCGGAG 
 120       110       100         90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-181-P2c_5p

mirBase accession

MIMAT0006636

Sequence

0- AACAUUCAUUGUUGUCGGUGGGUU -24

Get sequence

Proposed targets

TargetScanVert: cfa-miR-181d
miRDB: MIMAT0006636

Star sequence

Cfa-Mir-181-P2c_3p*

mirBase accession

None

Sequence

42- CCCACCGAGGGAUGAAUGUCA -63

Get sequence