Mir-181-P2b

MirGeneDB ID

Cfa-Mir-181-P2b

Family name

MIR-181 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-181b-2

Paralogues

Cfa-Mir-181-P1a Cfa-Mir-181-P1b Cfa-Mir-181-P1c Cfa-Mir-181-P2a Cfa-Mir-181-P2c

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr9: 58301314-58301373 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2b)

Mir-181-P2b chr9: 58301314-58301373 [-] UCSC Ensembl
Mir-181-P1b chr9: 58302547-58302606 [-] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

GCCAAGAUGGAAACACUGAUGGCUGCACUCAACAUUCAUUGCUGUCGGUGGGUUUGAGUCUGAAUCAACUCACUGAUCAAUGAAUGCAAACUGCGGACCAAACAACCUAAGGGAAGCAAA

Get precursor sequence

Structure

        10         20         30        40        50        60
GCCAAGAUGGAAACACUGA-   -|    CUCAA         CU           UGAGU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     C
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAA     U
AAACGAAGGGAAUCCAACAA   A^    CAAAC         --           CUAAG 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-181-P2b_5p

mirBase accession

MIMAT0006708

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Proposed targets

TargetScanVert: cfa-miR-181b
miRDB: MIMAT0006708

Star sequence

Cfa-Mir-181-P2b_3p*

mirBase accession

None

Sequence

38- CUCACUGAUCAAUGAAUGCAAA -60

Get sequence