Mir-181-P2b4

MirGeneDB ID

Xla-Mir-181-P2b4

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xla-Mir-181-P2b3

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Hsa-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Xtr-Mir-181-P2b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030739.1: 40078885-40078944 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGAGCGGCACACGAUAAUGGCUGCAAUAAACAUUCAUUGCUGUCGGUGGGUUGUAGUUUAGAAUAGCUCAUUGAUCAAUGAAUGCAAACUGCAGGCCACUCAACAAAGCUGAGAGAGG

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Structure

        10         20         30        40        50        60
GCAGAGCGGCACACGAUAA-   -|    AUAAA         CU           GUAGU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    ACC GACGU     GUAAGUAAC  UAGUUACUCGA     U
GGAGAGAGUCGAAACAACUC   G^    CAAAC         --           UAAGA 
.       110       100        90        80          70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

Eg	He	Re	St	St	St	St

Mature sequence

Xla-Mir-181-P2b4_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Xla-Mir-181-P2b4_3p* (predicted)

mirBase accession

None

Sequence

38- CUCAUUGAUCAAUGAAUGCAAA -60

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