| MirGeneDB ID | Lch-Mir-181-P2b |
|---|---|
| Family name | MIR-181 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-181-P1a Lch-Mir-181-P1b Lch-Mir-181-P1c Lch-Mir-181-P2a Lch-Mir-181-P2c |
| Orthologues | Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126572.1: 3682113-3682171 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-181-P2b) |
Mir-181-P2b
JH126572.1: 3682113-3682171 [-]
Ensembl
Mir-181-P1b JH126572.1: 3687977-3688037 [-] Ensembl |
| Seed | ACAUUCA |
| Precursor (pre-Mir +30nt flank) |
CUGAAUGUUUGAACAUUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUACUUUAGAUCAACUCACUGAUCAAUGAAUGCAAACUGCAGUCCAGAGCACACAAAAAAAAACAAGet precursor sequence |
| Structure | 10 20 30 40 50 CUGAAUGUUUGAACAUUAA- -| AUCAA CU UACUU UGG CUGCA CAUUCAUUG GUCGGUGGGUU \ ACC GACGU GUAAGUAAC UAGUCACUCAA U AACAAAAAAAAACACACGAG U^ CAAAC -- CUAGA 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-181-P2b_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
|
| Star sequence | Lch-Mir-181-P2b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CUCACUGAUCAAUGAAUGCAAA -59
Get sequence
|
