| MirGeneDB ID | Lch-Mir-181-P1b |
|---|---|
| Family name | MIR-181 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-181-P1a Lch-Mir-181-P1c Lch-Mir-181-P2a Lch-Mir-181-P2b Lch-Mir-181-P2c |
| Orthologues | Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126572.1: 3687977-3688037 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-181-P1b) |
Mir-181-P2b
JH126572.1: 3682113-3682171 [-]
Ensembl
Mir-181-P1b JH126572.1: 3687977-3688037 [-] Ensembl |
| Seed | ACAUUCA |
| Precursor (pre-Mir +30nt flank) |
GUCUACAGUAACUGUCUGGUGGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCUUUAUAAGAAACCAUCGACCGUUGACUGUACCUUGAGGUCUAUCACAGACACAUUGCCUUUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GUCUACAGUAACUGUCU- -| UGA U CU A UUGAGCU GGUGG CUUCAG ACA UCAACG GUCGGUG GU U CUAUC GGAGUU UGU AGUUGC CAGCUAC CA U AUUUCCGUUACACAGACA U^ CCA C -- - AAGAAUA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Lch-Mir-181-P1b_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
|
| Star sequence | Lch-Mir-181-P1b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- ACCAUCGACCGUUGACUGUACC -61
Get sequence
|
