Mir-181-P1b

MirGeneDB ID

Cfa-Mir-181-P1b

Family name

MIR-181 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-181a-2

Paralogues

Cfa-Mir-181-P1a Cfa-Mir-181-P1c Cfa-Mir-181-P2a Cfa-Mir-181-P2b Cfa-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr9: 58302547-58302606 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1b)

Mir-181-P2b chr9: 58301314-58301373 [-] UCSC Ensembl
Mir-181-P1b chr9: 58302547-58302606 [-] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

CCAGAACCCAGCCUUCAGAGGACUCCAAGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUGAAAAAACCACCGACCGUUGACUGUACCUUGGGGUCCUUACAAACAACACUACAUUUC

Get precursor sequence

Structure

        10          20        30        40        50        60 
CCAGAACCCAGCCUUCA--|            A   U      CU       A  UUGGGAU 
                   GAGGACUCCAAGG ACA UCAACG  GUCGGUG GU       \
                   UUCCUGGGGUUCC UGU AGUUGC  CAGCCAC CA       U
CUUUACAUCACAACAAACA^            A   C      --       -  AAAAAGU 
.       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-181-P1b_5p

mirBase accession

MIMAT0006707

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-181a
miRDB: MIMAT0006707

Star sequence

Cfa-Mir-181-P1b_3p*

mirBase accession

None

Sequence

38- ACCACCGACCGUUGACUGUACC -60

Get sequence