MirGeneDB 2.1
MirGeneDB ID

Gga-Mir-181-P1b

Family name MIR-181 (all species)
Seed ACAUUCA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-181a-2
Paralogues Gga-Mir-181-P1a  Gga-Mir-181-P2a  Gga-Mir-181-P2b 
Orthologues Aca-Mir-181-P1b  Ami-Mir-181-P1b  Bta-Mir-181-P1b  Cfa-Mir-181-P1b  Cli-Mir-181-P1b  Cmi-Mir-181-P1b  Cpi-Mir-181-P1b  Cpo-Mir-181-P1b  Dno-Mir-181-P1b  Dre-Mir-181-P1b2  Ete-Mir-181-P1b  Gja-Mir-181-P1b  Gmo-Mir-181-P1b2  Hsa-Mir-181-P1b  Lch-Mir-181-P1b  Loc-Mir-181-P1b  Mal-Mir-181-P1b2  Mdo-Mir-181-P1b  Mml-Mir-181-P1b  Mmu-Mir-181-P1b  Mun-Mir-181-P1b  Oan-Mir-181-P1b  Ocu-Mir-181-P1b  Pbv-Mir-181-P1b  Rno-Mir-181-P1b  Sha-Mir-181-P1b  Spt-Mir-181-P1b  Sto-Mir-181-P1b  Tgu-Mir-181-P1b  Tni-Mir-181-P1b1  Xla-Mir-181-P1b3  Xla-Mir-181-P1b4  Xtr-Mir-181-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 17: 9796043-9796103 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1b)		 Mir-181-P1b 17: 9796043-9796103 [+] UCSC Ensembl
Mir-181-P2b 17: 9797675-9797734 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUACACAGCCAUCUUUGGAUAGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGAACUAAGAAAAACCAUCGACCGUUGACUGUACCUUGAGGUUUAUCACAAACCCUCUGUUAAAC
Get precursor sequence
Structure
        10         20         30        40        50        60 
GUACACAGCCAUCUUUG-   -|       UGA   U      CU       A  UUGAGAA 
                  GAU AGCUUCAG   ACA UCAACG  GUCGGUG GU       C
                  CUA UUGGAGUU   UGU AGUUGC  CAGCUAC CA       U
CAAAUUGUCUCCCAAACA   U^       CCA   C      --       -  AAAAGAA 
 .       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-181-P1b_5p
mirBase accessionMIMAT0001168
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Proposed targets TargetScanVert: gga-miR-181a-5p
miRDB: MIMAT0001168
Star sequence

Gga-Mir-181-P1b_3p*
mirBase accessionNone
Sequence 
39- ACCAUCGACCGUUGACUGUACC -61
Get sequence