Mir-181-P1b

MirGeneDB ID

Hsa-Mir-181-P1b

Family name

MIR-181 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-181a-2

Paralogues

Hsa-Mir-181-P1a Hsa-Mir-181-P1c Hsa-Mir-181-P2a Hsa-Mir-181-P2b Hsa-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr9: 124692480-124692539 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1b)

Mir-181-P1b chr9: 124692480-124692539 [+] UCSC Ensembl
Mir-181-P2b chr9: 124693725-124693784 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

UAUCAGGCCAGCCUUCAGAGGACUCCAAGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUGAAAAAACCACUGACCGUUGACUGUACCUUGGGGUCCUUACAGACGACACUACAUUUC

Get precursor sequence

Structure

        10          20        30        40        50        60 
UAUCAGGCCAGCCUUCA--|            A   U      CU       A  UUGGGAU 
                   GAGGACUCCAAGG ACA UCAACG  GUCGGUG GU       \
                   UUCCUGGGGUUCC UGU AGUUGC  CAGUCAC CA       U
CUUUACAUCACAGCAGACA^            A   C      --       -  AAAAAGU 
.       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-181-P1b_5p

mirBase accession

MIMAT0000256

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Proposed targets

microrna.org: MIMAT0000256
TargetScanVert: hsa-miR-181a-5p
TargetMiner: hsa-miR-181a-5p
miRDB: MIMAT0000256

Star sequence

Hsa-Mir-181-P1b_3p*

mirBase accession

MIMAT0004558

Sequence

38- ACCACUGACCGUUGACUGUACC -60

Get sequence

Proposed targets

microrna.org: MIMAT0004558
TargetScanVert: hsa-miR-181a-2-3p
TargetMiner: hsa-miR-181a-2-3p
miRDB: MIMAT0004558