| MirGeneDB ID | Spt-Mir-181-P1b |
|---|---|
| Family name | MIR-181 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-181-P1a Spt-Mir-181-P1c Spt-Mir-181-P2a Spt-Mir-181-P2b Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 |
| Orthologues | Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01012679.1: 9532674-9532734 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-181-P1b) |
Mir-181-P2b
QEPC01012679.1: 9531433-9531492 [-]
UCSC
Ensembl
Mir-181-P1b QEPC01012679.1: 9532674-9532734 [-] UCSC Ensembl |
| Seed | ACAUUCA |
| Precursor (pre-Mir +30nt flank) |
GGUGGCAGCAAGCAUUGGAUAGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGGAUAAGAAAAAACCAUCGACCGUUGACUGUACCUUGAGGUUUAUCACGGACACAUUAAACAAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGUGGCAGCAAGCAUUG- -| UGA U CU A UUGAGGA GAU AGCUUCAG ACA UCAACG GUCGGUG GU U CUA UUGGAGUU UGU AGUUGC CAGCUAC CA A AAACAAAUUACACAGGCA U^ CCA C -- - AAAAAGA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Spt-Mir-181-P1b_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
|
| Star sequence | Spt-Mir-181-P1b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- ACCAUCGACCGUUGACUGUACC -61
Get sequence
|
