Mir-181-P1b

MirGeneDB ID

Ami-Mir-181-P1b

Family name

MIR-181 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-181a-2

Paralogues

Ami-Mir-181-P1a Ami-Mir-181-P1c Ami-Mir-181-P2a Ami-Mir-181-P2b Ami-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017711793.1: 111753-111815 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-181-P1b)

Mir-181-P1b NW_017711793.1: 111753-111815 [+] UCSC
Mir-181-P2b NW_017711793.1: 113586-113645 [+] UCSC

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

GUAUACAGCCGGCUACAGAUAGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCAUUAGAAAAAAAACCAUCGACCGUUGACUGUACCUUGAGGUUUAUCACAGGCACGCUUGGAUAC

Get precursor sequence

Structure

        10         20         30        40        50        60  
GUAUACAGCCGGCUACA-   -|       UGA   U      CU       A  UUGAGCAU 
                  GAU AGCUUCAG   ACA UCAACG  GUCGGUG GU        U
                  CUA UUGGAGUU   UGU AGUUGC  CAGCUAC CA        A
CAUAGGUUCGCACGGACA   U^       CCA   C      --       -  AAAAAAAG 
 120       110       100        90          80         70