MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-181-P1b3

Family name MIR-181 (all species)
Seed ACAUUCA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-181-P1a3  Xla-Mir-181-P1a4  Xla-Mir-181-P1b4  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4 
Orthologues Aca-Mir-181-P1b  Ami-Mir-181-P1b  Bta-Mir-181-P1b  Cfa-Mir-181-P1b  Cli-Mir-181-P1b  Cmi-Mir-181-P1b  Cpi-Mir-181-P1b  Cpo-Mir-181-P1b  Dno-Mir-181-P1b  Ete-Mir-181-P1b  Gga-Mir-181-P1b  Gja-Mir-181-P1b  Hsa-Mir-181-P1b  Lch-Mir-181-P1b  Loc-Mir-181-P1b  Mdo-Mir-181-P1b  Mml-Mir-181-P1b  Mmu-Mir-181-P1b  Mun-Mir-181-P1b  Oan-Mir-181-P1b  Ocu-Mir-181-P1b  Pbv-Mir-181-P1b  Rno-Mir-181-P1b  Sha-Mir-181-P1b  Spt-Mir-181-P1b  Sto-Mir-181-P1b  Tgu-Mir-181-P1b  Xtr-Mir-181-P1b 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030738.1: 10230165-10230231 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUGGAGCCCCAACUUGAUGGCUUCAGAGAACAUUCAACGCUGUCGGUGAGUUUGAGAAAGUAUAAAAAUGUAAACCAUCGGCCGUUGACUGUACCCUGAGGCUUUUCACAAACAAGUGCCUGAAC
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Structure
        10         20         30        40        50        60    
CACUGGAGCCCCAACUU-  U-|       AGA   U      CU       A    GAGAAAGU 
                  GA  GGCUUCAG   ACA UCAACG  GUCGGUG GUUU        A
                  CU  UCGGAGUC   UGU AGUUGC  CGGCUAC CAAA        U
CAAGUCCGUGAACAAACA  UU^       CCA   C      --       -    UGUAAAAA 
     120       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-181-P1b3_5p

mirBase accessionNone
Sequence
0- AACAUUCAACGCUGUCGGUGAGUUU -25
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Star sequence

Xla-Mir-181-P1b3_3p*

mirBase accessionNone
Sequence
45- ACCAUCGGCCGUUGACUGUACC -67
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