MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-181-P1a4

Family name MIR-181 (all species)
Seed CCAUCGA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-181a
Paralogues Xla-Mir-181-P1a3  Xla-Mir-181-P1b3  Xla-Mir-181-P1b4  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Xtr-Mir-181-P1a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030731.1: 84359749-84359810 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1a4)		 Mir-181-P2a4 NC_030731.1: 84358941-84359001 [-] UCSC Ensembl
Mir-181-P1a4 NC_030731.1: 84359749-84359810 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACUUUGUUUGACAUGGCUACUUUAAUGAACAUUCAACGCUGUCGGUGAGUUUGGUAUCUAAAGGCAAACCAUCGAUCGUUGACUGUACAUUACGGCAAUGCCAGUAACUUCUGUCUCCA
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Structure
        10             20        30        40        50        60  
AAAACUUUGUUUGACAUG-----|  ACUU     A   U      CU       A  UUGGUAUC 
                       GCU    UAAUG ACA UCAACG  GUCGGUG GU        \
                       CGG    AUUAC UGU AGUUGC  UAGCUAC CA        U
ACCUCUGUCUUCAAUGACCGUAA^  C---     A   C      --       -  AACGGAAA 
120       110       100           90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-181-P1a4_5p*
mirBase accessionMIMAT0046485
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Mature sequence

Xla-Mir-181-P1a4_3p
mirBase accessionMIMAT0046486
Sequence 
40- ACCAUCGAUCGUUGACUGUACA -62
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