MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-181-P1a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-181-P1b  Loc-Mir-181-P1c  Loc-Mir-181-P2a  Loc-Mir-181-P2b  Loc-Mir-181-P2c 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xla-Mir-181-P1a3  Xla-Mir-181-P1a4  Xtr-Mir-181-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG10: 12644268-12644330 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUGUAUUUAUGUGAUGUUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGAUAAAUUGAGAAAACCAUCGACCGUUGAUUGUACCCUGCGGCCAGCCUUCAUGUGCUUCGUGGCA
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Structure
        10          20        30        40        50        60  
GUUUGUAUUUAUGUGAU--|  U   U   UGA   U      CU       A  UUGAGAUA 
                   GUU GCU CAG   ACA UCAACG  GUCGGUG GU        A
                   CGA CGG GUC   UGU AGUUGC  CAGCUAC CA        A
ACGGUGCUUCGUGUACUUC^  C   C   CCA   U      --       -  AAAGAGUU 
 120       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-181-P1a_5p

mirBase accessionNone
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Loc-Mir-181-P1a_3p*

mirBase accessionNone
Sequence
41- ACCAUCGACCGUUGAUUGUACC -63
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