MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-181-P1a1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-181-P1b2  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mal-Mir-181-P2a1  Mal-Mir-181-P2b2  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xtr-Mir-181-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884719.1: 1186078-1186140 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCACCAUCAGGUCUGUGUUCGCCCCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCUAAAUUGAAAAAACCAUCGACCGUUGAUUGUACCCUGUGGCCAGCCUUUGUCACUCCUUGUCUC
Get precursor sequence
Structure
        10          20        30        40        50        60  
GUCACCAUCAGGUCUGU--|  C   C   UGA   U      CU       A    GAGCUA 
                   GUU GCC CAG   ACA UCAACG  GUCGGUG GUUU      A
                   CGA CGG GUC   UGU AGUUGC  CAGCUAC CAAA      A
CUCUGUUCCUCACUGUUUC^  C   U   CCA   U      --       -    AAAGUU 
 120       110       100        90          80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-181-P1a1_5p

mirBase accessionNone
Sequence
0- AACAUUCAACGCUGUCGGUGAGUUU -25
Get sequence
Star sequence

Mal-Mir-181-P1a1_3p*

mirBase accessionNone
Sequence
41- ACCAUCGACCGUUGAUUGUACC -63
Get sequence