MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-181-P1a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-181a-1
Paralogues Cli-Mir-181-P1b  Cli-Mir-181-P2a  Cli-Mir-181-P2b 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xla-Mir-181-P1a3  Xla-Mir-181-P1a4  Xtr-Mir-181-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold7: 7344755-7344816 [+]
Clustered miRNAs
(< 50kb from Mir-181-P1a)		 Mir-181-P1a scaffold7: 7344755-7344816 [+]
Mir-181-P2a scaffold7: 7344940-7344999 [+]
Precursor
(pre-Mir +30nt flank)
CGGAGUUCUGUUGUAGUGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAGUGAAAACCAUCGACCGUUGAUUGUACCCUCCAGCUAACCAUCCUCCUCCUUACUUCA
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Structure
        10         20         30        40        50        60  
CGGAGUUCUGUUGUAGU-    -|  UC  UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        \
                  CCAA CGA  UC   UGU AGUUGC  CAGCUAC CA        A
ACUUCAUUCCUCCUCCUA    U^  CC  CCA   U      --       -  AAAGUGAA 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-181-P1a_5p
mirBase accessionMIMAT0038550
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Cli-Mir-181-P1a_3p*
mirBase accessionMIMAT0038551
Sequence 
40- ACCAUCGACCGUUGAUUGUACC -62
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