MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-181-P1a

Family name MIR-181 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-181a-2
Paralogues Eca-Mir-181-P1b  Eca-Mir-181-P1c  Eca-Mir-181-P2a  Eca-Mir-181-P2b  Eca-Mir-181-P2c 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cja-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Laf-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmr-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Neu-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Pab-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xla-Mir-181-P1a3  Xla-Mir-181-P1a4  Xtr-Mir-181-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009177.1: 27734356-27734417 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1a)		 Mir-181-P2a CM009177.1: 27734174-27734235 [-] UCSC Ensembl
Mir-181-P1a CM009177.1: 27734356-27734417 [-] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
AGAAUUCUGAGUCUGAGGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAUCAAAACCAUCGACCGUUGAUUGUGCCCUGUGGCUAGCCAUCCUCUCCUCCAUGGCU
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Structure
        10         20         30        40        50        60  
AGAAUUCUGAGUCUGAG-    -|  U   UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU CAG   ACA UCAACG  GUCGGUG GU        \
                  CCGA CGG GUC   UGU AGUUGC  CAGCUAC CA        A
UCGGUACCUCCUCUCCUA    U^  U   CCG   U      --       -  AAACUAAA 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-181-P1a_5p
mirBase accessionMIMAT0013178
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Eca-Mir-181-P1a_3p*
mirBase accessionNone
Sequence 
40- ACCAUCGACCGUUGAUUGUGCC -62
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