MirGeneDB

MirGeneDB ID

Mmu-Mir-181-P1a

Family name MIR-181 (all species)
Seed ACAUUCA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-181a-1
Paralogues Mmu-Mir-181-P1b  Mmu-Mir-181-P1c  Mmu-Mir-181-P2a  Mmu-Mir-181-P2b  Mmu-Mir-181-P2c 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Hsa-Mir-181-P1a  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Xtr-Mir-181-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr1: 137966468-137966529 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-181-P1a)
Mir-181-P1a chr1: 137966468-137966529 [+] UCSC Ensembl
Mir-181-P2a chr1: 137966650-137966710 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACAUCUCUGCCUCACAGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUCAAAUAAAAACCAUCGACCGUUGAUUGUACCCUAUAGCUAACCAUCAUCUACUCCAUGGCC
Get precursor sequence
Structure
        10         20         30        40        50        60  
CACAUCUCUGCCUCACA-    -|  UC  UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        \
                  CCAA CGA  UC   UGU AGUUGC  CAGCUAC CA        C
CCGGUACCUCAUCUACUA    U^  UA  CCA   U      --       -  AAAAUAAA 
120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Ce Ce Es He Ki Li Lu Ov Pa Sk Sp Te Em
Mature sequence

Mmu-Mir-181-P1a_5p

MirBase accessionMIMAT0000210
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
Validated targets microrna.org: MIMAT0000210
TargetScanVert: mmu-miR-181a-5p
miRDB: MIMAT0000210
Star sequence

Mmu-Mir-181-P1a_3p*

MirBase accessionMIMAT0000660
Sequence
40- ACCAUCGACCGUUGAUUGUACC -62
Get sequence
Validated targets microrna.org: MIMAT0000660
TargetScanVert: mmu-miR-181a-1-3p
miRDB: MIMAT0000660