MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-181-P1a1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-181a-1
Paralogues Tni-Mir-181-P1b1  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2  Tni-Mir-181-P2a1  Tni-Mir-181-P2b1  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Xtr-Mir-181-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
1: 18565261-18565323 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1a1)
Mir-181-P2a1 1: 18565056-18565116 [-] UCSC Ensembl
Mir-181-P1a1 1: 18565261-18565323 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGCCAUCAGGCCUGCGCUCGCCCCGGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCCAAAUUGGAAAAACCAUCGACCGUUGAUUGUACCCCGUGGCCGGCAUUUUAUCACCUAGCAUCU
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Structure
        10          20        30        40        50        60  
UUCGCCAUCAGGCCUGC--|  C   C   UGA   U      CU       A    GAGCCA 
                   GCU GCC CGG   ACA UCAACG  GUCGGUG GUUU      A
                   CGG CGG GCC   UGU AGUUGC  CAGCUAC CAAA      A
UCUACGAUCCACUAUUUUA^  C   U   CCA   U      --       -    AAGGUU 
 120       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-181-P1a1_5p

mirBase accessionMIMAT0003050
Sequence
0- AACAUUCAACGCUGUCGGUGAGUUU -25
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Star sequence

Tni-Mir-181-P1a1_3p*

mirBase accessionMIMAT0003006
Sequence
41- ACCAUCGACCGUUGAUUGUACC -63
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