MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-181-P1a

Family name MIR-181 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-181-P1b  Cmi-Mir-181-P1c  Cmi-Mir-181-P2a  Cmi-Mir-181-P2b  Cmi-Mir-181-P2c 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cja-Mir-181-P1a  Cli-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Eca-Mir-181-P1a  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Laf-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmr-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Neu-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Pab-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xla-Mir-181-P1a3  Xla-Mir-181-P1a4  Xtr-Mir-181-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635861.1: 13132643-13132704 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1a)		 Mir-181-P1a KI635861.1: 13132643-13132704 [+] UCSC Ensembl
Mir-181-P2a KI635861.1: 13132847-13132907 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
GACGUCAGAAAUGUACUGGUGGUUUCAGGGAACAUUCAACGCUGUCGGUGAGUUUGAUGCUAUUGGAGAAACCAUCGACCGUUGAUUGUACCUUGUAUCCAGCCUUCACCUGCUUCUGGGCA
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Structure
        10          20        30        40        50        60  
GACGUCAGAAAUGUACU-  -|  UUU     A   U      CU       A  UUGAUGCU 
                  GG UGG   CAGGG ACA UCAACG  GUCGGUG GU        \
                  CC ACC   GUUCC UGU AGUUGC  CAGCUAC CA        A
ACGGGUCUUCGUCCACUU  G^  UAU     A   U      --       -  AAGAGGUU 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-181-P1a_5p
mirBase accessionNone
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Cmi-Mir-181-P1a_3p*
mirBase accessionNone
Sequence 
40- ACCAUCGACCGUUGAUUGUACC -62
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