Mir-181-P1a1

MirGeneDB ID

Dre-Mir-181-P1a1

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-181a-1

Paralogues

Dre-Mir-181-P1a2 Dre-Mir-181-P1b2 Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Dre-Mir-181-P2b2 Dre-Mir-181-P2c1 Dre-Mir-181-P2c2

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xtr-Mir-181-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr22: 22826011-22826074 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1a1)

Mir-181-P2a1 chr22: 22825805-22825864 [-] UCSC Ensembl
Mir-181-P1a1 chr22: 22826011-22826074 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCACCAUCAGGCCACCGUUUGCCUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCUAAAUGGAAAAAAACCAUCGACCGUUGAUUGUACCCUGCGGCCGAGCCCUACCGAGCCUCGCUUC

Get precursor sequence

Structure

        10         20         30        40        50        60   
CUCACCAUCAGGCCACC-    -|  U   UGA   U      CU       A  UUGAGCUAA 
                  GUUU GCC CAG   ACA UCAACG  GUCGGUG GU         \
                  CGAG CGG GUC   UGU AGUUGC  CAGCUAC CA         A
CUUCGCUCCGAGCCAUCC    C^  C   CCA   U      --       -  AAAAAAGGU 
  120       110       100        90          80         70