Mir-181-P2b2

MirGeneDB ID

Dre-Mir-181-P2b2

Family name

MIR-181 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-181b-2

Paralogues

Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Dre-Mir-181-P1b2 Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Dre-Mir-181-P2c1 Dre-Mir-181-P2c2

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Xtr-Mir-181-P2b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr8: 53023694-53023753 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2b2)

Mir-181-P1b2 chr8: 53023545-53023607 [+] UCSC Ensembl
Mir-181-P2b2 chr8: 53023694-53023753 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

GGGUGUAUUAGCCCACUAAUGACUGCAAUAAACAUUCAUUGCUGUCGGUGGGUUUCUAAUAGACACAACUCACUGAUCAAUGAAUGCAAACUGCGGUGCAAGAACCUCAGUCUACAGAUU

Get precursor sequence

Structure

        10         20         30        40        50        60
GGGUGUAUUAGCCCACUAA-  -|     AUAAA         CU           UCUAA 
                    UG ACUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    AC UGGCGU     GUAAGUAAC  UAGUCACUCAA     A
UUAGACAUCUGACUCCAAGA  G^     CAAAC         --           CACAG 
.       110       100        90        80          70