Mir-181-P2b

MirGeneDB ID

Ami-Mir-181-P2b

Family name

MIR-181 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-181b-2

Paralogues

Ami-Mir-181-P1a Ami-Mir-181-P1b Ami-Mir-181-P1c Ami-Mir-181-P2a Ami-Mir-181-P2c

Orthologues

Aca-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017711793.1: 113586-113645 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-181-P2b)

Mir-181-P1b NW_017711793.1: 111753-111815 [+] UCSC
Mir-181-P2b NW_017711793.1: 113586-113645 [+] UCSC

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

GCACAGCUCGUGCAUCUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUUAGUUUGUACCAACUCACUGAUCAAUGAAUGCAAACUGCGGACCAGAUAGCUAAGAGUGCGUGCU

Get precursor sequence

Structure

        10         20         30        40        50        60
GCACAGCUCGUGCAUCUAA-   -|    AUCAA         CU           UUAGU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAA     U
UCGUGCGUGAGAAUCGAUAG   A^    CAAAC         --           CCAUG 
.       110       100        90        80          70