MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-181b-3
Paralogues Ami-Mir-181-P1a  Ami-Mir-181-P1b  Ami-Mir-181-P1c  Ami-Mir-181-P2a  Ami-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713323.1: 105423-105485 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-181-P2c)
Mir-181-P2c NW_017713323.1: 105423-105485 [-] UCSC
Mir-181-P1c NW_017713323.1: 106446-106507 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGAUUCCCAGAAGCCCAAAAAGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGUGAUGCUGAAGGGAAAACUCACGGAUCAAUGAAUGCAACUGUGAUUGGAACAGACACUUUACUGUACC
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Structure
        10        20          30        40        50        60  
AGAUUCCCAGAAGCCCAAAA--|      AUCAA         CU   G       GUGAUGC 
                      AGUCACA     CAUUCAUUG  GUC GUGGGUU       U
                      UUAGUGU     GUAAGUAAC  UAG CACUCAA       G
CCAUGUCAUUUCACAGACAAGG^      CAAC-         --   G       AAGGGAA 
 120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Ami-Mir-181-P2c_5p

mirBase accessionMIMAT0038190
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Ami-Mir-181-P2c_3p*

mirBase accessionMIMAT0038193
Sequence
42- CUCACGGAUCAAUGAAUGCAA -63
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