| MirGeneDB ID | Lch-Mir-181-P2c |
|---|---|
| Family name | MIR-181 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-181-P1a Lch-Mir-181-P1b Lch-Mir-181-P1c Lch-Mir-181-P2a Lch-Mir-181-P2b |
| Orthologues | Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126758.1: 823305-823368 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-181-P2c) |
Mir-181-P1c
JH126758.1: 817111-817172 [+]
Ensembl
Mir-181-P2c JH126758.1: 823305-823368 [+] Ensembl |
| Seed | ACAUUCA |
| Precursor (pre-Mir +30nt flank) |
ACAAUGCCUGGAGUCACAAAAGUCACAAUUAACAUUCAUUGCUGUCGGUGGGUUGUGAUGUUUAAAAAGAAACUCACUGCACAAUGAAUGCCACUGUGGCUGUCCUAUAUCUGCAGUAAGACAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 ACAAUGCCUGGAGUCACAAA---| AUUAA C U GUGAUGU AGUCACA CAUUCAUUG UG CGGUGGGUU U UCGGUGU GUAAGUAAC AC GUCACUCAA U UACAGAAUGACGUCUAUAUCCUG^ CACC- - - AGAAAAA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-181-P2c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
|
| Star sequence | Lch-Mir-181-P2c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
42- CUCACUGCACAAUGAAUGCCAC -64
Get sequence
|
