| MirGeneDB ID | Lch-Mir-181-P2a |
|---|---|
| Family name | MIR-181 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-181-P1a Lch-Mir-181-P1b Lch-Mir-181-P1c Lch-Mir-181-P2b Lch-Mir-181-P2c |
| Orthologues | Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Laf-Mir-181-P2a Loc-Mir-181-P2a Mal-Mir-181-P2a1 Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xtr-Mir-181-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127371.1: 199853-199914 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-181-P2a) |
Mir-181-P2a
JH127371.1: 199853-199914 [-]
Ensembl
Mir-181-P1a JH127371.1: 200037-200097 [-] Ensembl |
| Seed | ACAUUCA |
| Precursor (pre-Mir +30nt flank) |
UGAAGAAAAUUUAUUGCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUAUGUGGAAAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCGGCUUUCAGCAAUGGCAUGAUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGAAGAAAAUUUAUUGCAAA---| AUCAA CUG UAACUA GGUCACA CAUUCAUUG UCGGUGGGUU U CCGGUGU GUAAGUAAC AGUCACUCGA G GUAGUACGGUAACGACUUUCGGC^ CAAC- A-- AAAGGU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-181-P2a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
|
| Star sequence | Lch-Mir-181-P2a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- CUCACUGAACAAUGAAUGCAAC -62
Get sequence
|
