Mir-181-P2a

MirGeneDB ID

Sto-Mir-181-P2a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-181-P1a Sto-Mir-181-P1b Sto-Mir-181-P1c Sto-Mir-181-P2b Sto-Mir-181-P2c

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mal-Mir-181-P2a1 Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xtr-Mir-181-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01003042.1: 24795-24855 [-]

Precursor
(pre-Mir +30nt flank)

GAGAAACAAGUCCCAGCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUAUAUGGUAAAGCUCGCUGAUCAAUGAAUGCAACUGUGGCCCAGAUUUUAGCAAUGGCGCCAA

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Structure

        10        20          30        40        50        60 
GAGAAACAAGUCCCAGCAAA--|      AUCAA         CU           UAACUA 
                      GGUCACA     CAUUCAUUG  GUCGGUGGGUU      U
                      CCGGUGU     GUAAGUAAC  UAGUCGCUCGA      A
AACCGCGGUAACGAUUUUAGAC^      CAAC-         --           AAUGGU 
 .       110       100        90         80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Sto-Mir-181-P2a_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Sto-Mir-181-P2a_3p*

mirBase accession

None

Sequence

40- CUCGCUGAUCAAUGAAUGCAA -61

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