Mir-181-P2a4

MirGeneDB ID

Xla-Mir-181-P2a4

Family name

MIR-181 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-181b-1

Paralogues

Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xla-Mir-181-P2a3 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Hsa-Mir-181-P2a Laf-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Xtr-Mir-181-P2a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030731.1: 84358941-84359001 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2a4)

Mir-181-P2a4 NC_030731.1: 84358941-84359001 [-] UCSC Ensembl
Mir-181-P1a4 NC_030731.1: 84359749-84359810 [-] UCSC Ensembl

Seed

UCGCUGA

Precursor
(pre-Mir +30nt flank)

CAUCAUCACAAAAAAUGCAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGAGUUAAGAACACAAGCUCGCUGAACGAUGAAUGCAACUGUGUCCCUGACUUAUCCAGGCAAGAAAA

Get precursor sequence

Structure

        10          20        30        40        50        60 
CAUCAUCACAAAAAAUG--| A  U    AUCAA         CUG          GAGUUA 
                   CA GG CACA     CAUUCAUUG   UCGGUGGGUU      A
                   GU CC GUGU     GUAAGUAGC   AGUCGCUCGA      G
AAAAGAACGGACCUAUUCA^ C  U    CAAC-         A--          ACACAA 
 .       110       100        90         80          70