MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-181-P2a

Family name MIR-181 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-181b-1
Paralogues Cfa-Mir-181-P1a  Cfa-Mir-181-P1b  Cfa-Mir-181-P1c  Cfa-Mir-181-P2b  Cfa-Mir-181-P2c 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cja-Mir-181-P2a  Cli-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Eca-Mir-181-P2a  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Laf-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mal-Mir-181-P2a1  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmr-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Neu-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pab-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xtr-Mir-181-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr7: 4055651-4055710 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2a)		 Mir-181-P1a chr7: 4055465-4055526 [+] UCSC Ensembl
Mir-181-P2a chr7: 4055651-4055710 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
GCAGAGAUUAUUUUUUCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGAACUGUGUGGACAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCGCUUUUUGCAGACACAAUCC
Get precursor sequence
Structure
        10        20         30        40        50        60 
GCAGAGAUUAUUUUUUCAAA-|      AUCAA         CUG          GAACUG 
                     GGUCACA     CAUUCAUUG   UCGGUGGGUU      U
                     CCGGUGU     GUAAGUAAC   AGUCACUCGA      G
CCUAACACAGACGUUUUUCGC^      CAAC-         A--          ACAGGU 
.       110       100        90         80          70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-181-P2a_5p
mirBase accessionMIMAT0006708
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Proposed targets TargetScanVert: cfa-miR-181b
miRDB: MIMAT0006708
Star sequence

Cfa-Mir-181-P2a_3p*
mirBase accessionNone
Sequence 
40- CUCACUGAACAAUGAAUGCA -60
Get sequence