Mir-181-P1c

MirGeneDB ID

Cfa-Mir-181-P1c

Family name

MIR-181 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-181c

Paralogues

Cfa-Mir-181-P1a Cfa-Mir-181-P1b Cfa-Mir-181-P2a Cfa-Mir-181-P2b Cfa-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr20: 48593343-48593403 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1c)

Mir-181-P2c chr20: 48593159-48593221 [-] UCSC Ensembl
Mir-181-P1c chr20: 48593343-48593403 [-] UCSC Ensembl
Mir-23-P3 chr20: 48620332-48620390 [+] UCSC Ensembl
Mir-27-P3 chr20: 48620555-48620616 [+] UCSC Ensembl
Mir-24-P3 chr20: 48620685-48620744 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

CCCCUGGAGAAGUUGCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGGCAGCUCAGGCAAACCAUCGACCGUUGAGUGGACCCCGAGGCCUGGAACUGCCAUCCACCCAUCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
CCCCUGGAGAAGUUGCCAA--|     G    AA        CU       A   UGGGCAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA CCCC  GUGAGUUG  CAGCUAC CAA       C
ACUACCCACCUACCGUCAAGG^     G    AG        C-       -   ACGGACU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-181-P1c_5p

mirBase accession

MIMAT0006635

Sequence

0- AACAUUCAACCUGUCGGUGAGUU -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-181c
miRDB: MIMAT0006635

Star sequence

Cfa-Mir-181-P1c_3p*

mirBase accession

None

Sequence

39- ACCAUCGACCGUUGAGUGGACC -61

Get sequence