MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-181-P1c

Family name MIR-181 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-181-P1a  Cmi-Mir-181-P1b  Cmi-Mir-181-P2a  Cmi-Mir-181-P2b  Cmi-Mir-181-P2c 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cja-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Eca-Mir-181-P1c  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636034.1: 193153-193212 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1c)		 Mir-181-P1c KI636034.1: 193153-193212 [+] UCSC Ensembl
Mir-181-P2c KI636034.1: 193682-193742 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
AAGAAUGUGUGGACAGUGAUGACUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUAGAUGAACCAUCGACCGUUGACUGUACCCUGCAGCCCAGUCAGUGACACCUGGACCAG
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Structure
        10         20         30        40        50        60 
AAGAAUGUGUGGACAGUGA-  A-| U   UGA   U      CU       A  UUGGGAU 
                    UG  CU CAG   ACA UCAACG  GUCGGUG GU       \
                    AC  GA GUC   UGU AGUUGC  CAGCUAC CA       U
GACCAGGUCCACAGUGACUG  CC^ C   CCA   C      --       -  AGUAGAU 
.       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-181-P1c_5p
mirBase accessionNone
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Cmi-Mir-181-P1c_3p*
mirBase accessionNone
Sequence 
38- ACCAUCGACCGUUGACUGUACC -60
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