Mir-181-P1c

MirGeneDB ID

Mml-Mir-181-P1c

Family name

MIR-181 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-181c

Paralogues

Mml-Mir-181-P1a Mml-Mir-181-P1b Mml-Mir-181-P2a Mml-Mir-181-P2b Mml-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014354.1: 13475982-13476042 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1c)

Mir-24-P3 CM014354.1: 13435440-13435499 [-] UCSC Ensembl
Mir-27-P3 CM014354.1: 13435598-13435659 [-] UCSC Ensembl
Mir-23-P3 CM014354.1: 13435742-13435800 [-] UCSC Ensembl
Mir-181-P1c CM014354.1: 13475982-13476042 [+] UCSC Ensembl
Mir-181-P2c CM014354.1: 13476167-13476229 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

GUCCCGGAGAAUUUGCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGGCAGCUCAGGCAAACCAUCGACCGUUGAGUGGACCCUGAGACCUGGACUUGCCAUCCUCCUUCCG

Get precursor sequence

Structure

        10          20        30        40        50        60 
GUCCCGGAGAAUUUGCCAA--|     G    AA        CU       A   UGGGCAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCAGA UCCC  GUGAGUUG  CAGCUAC CAA       C
GCCUUCCUCCUACCGUUCAGG^     G    AG        C-       -   ACGGACU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-181-P1c_5p

mirBase accession

MIMAT0002509

Sequence

0- AACAUUCAACCUGUCGGUGAGUU -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-181c-5p

Star sequence

Mml-Mir-181-P1c_3p*

mirBase accession

MIMAT0026587

Sequence

39- ACCAUCGACCGUUGAGUGGACC -61

Get sequence

Proposed targets

TargetScanVert: mml-miR-181c-3p