MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-181-P1c

Family name MIR-181 (all species)
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-181-P1a  Spt-Mir-181-P1b  Spt-Mir-181-P2a  Spt-Mir-181-P2b  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cja-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Eca-Mir-181-P1c  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01000882.1: 194301-194362 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1c)
Mir-181-P2c4 QEPC01000882.1: 188702-188764 [-] UCSC Ensembl
Mir-181-P2c3 QEPC01000882.1: 191253-191315 [-] UCSC Ensembl
Mir-181-P1c QEPC01000882.1: 194301-194362 [-] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)
GCCUCUUCUCAAACGCCCAAGGUCUCGGGGAACAUUCAACGCUGUCGGUGAGUUUUGUCCUCCCAGUUAAACCAUCGACCGUUGAGUGUACCCUGGGGCUGGAGCGGCAGCGAGACCCAGGA
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Structure
        10        20          30        40        50        60  
GCCUCUUCUCAAACGCCCAA--|         A          CU       A  UUUGUCCU 
                      GGUCUCGGGG ACAUUCAACG  GUCGGUG GU        \
                      UCGGGGUCCC UGUGAGUUGC  CAGCUAC CA        C
AGGACCCAGAGCGACGGCGAGG^         A          --       -  AAUUGACC 
120       110       100        90        80           70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-181-P1c_5p (predicted)

mirBase accessionNone
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Spt-Mir-181-P1c_3p* (predicted)

mirBase accessionNone
Sequence
40- ACCAUCGACCGUUGAGUGUACC -62
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