| MirGeneDB ID | Lch-Mir-181-P1c |
|---|---|
| Family name | MIR-181 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-181-P1a Lch-Mir-181-P1b Lch-Mir-181-P2a Lch-Mir-181-P2b Lch-Mir-181-P2c |
| Orthologues | Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126758.1: 817111-817172 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-181-P1c) |
Mir-181-P1c
JH126758.1: 817111-817172 [+]
Ensembl
Mir-181-P2c JH126758.1: 823305-823368 [+] Ensembl |
| Seed | ACAUUCA |
| Precursor (pre-Mir +30nt flank) |
AGGACUUCUAAGAGUGCUAAGGUUUCAGUGAACAUUCAGCGCUGUCGGUGAGUUUGGGCAGUAAGAUUAAACCAUCGACCGCUGACUGUACCCUGCAACUGCAACAGCGUCAAGGGGAGGACGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGGACUUCUAAGAGUGCUAA--| U UGA U CU A UUGGGCAG GGUU CAG ACA UCAGCG GUCGGUG GU \ UCAA GUC UGU AGUCGC CAGCUAC CA U CAGGAGGGGAACUGCGACAACG^ C CCA C -- - AAUUAGAA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-181-P1c_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAGCGCUGUCGGUGAGU -23
Get sequence
|
| Star sequence | Lch-Mir-181-P1c_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- ACCAUCGACCGCUGACUGUACC -62
Get sequence
|
