Mir-181-P2c

MirGeneDB ID

Eca-Mir-181-P2c

Family name

MIR-181 (all species)

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Mir-181-P1a Eca-Mir-181-P1b Eca-Mir-181-P1c Eca-Mir-181-P2a Eca-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009154.1: 46208382-46208444 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2c)

Mir-181-P2c CM009154.1: 46208382-46208444 [-] UCSC Ensembl
Mir-181-P1c CM009154.1: 46208596-46208656 [-] UCSC Ensembl
Mir-23-P3 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Mir-27-P3 CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Mir-24-P3 CM009154.1: 46233360-46233419 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

CGGUGGGUUGUGAGAGCGAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACGGAGGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCUGGACACAGCCUGAGGGG

Get precursor sequence

Structure

        10        20          30        40        50        60  
CGGUGGGUUGUGAGAGCGAA--|      AUCA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       C
                      UCGGUGU    UGUAAGUAG G  GGCCACCCAG       G
GGGGAGUCCGACACAGGUCGGG^      CAC-         G --          ACCGGAG 
 120       110       100         90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-181-P2c_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGUUGUCGGUGGGUU -24

Get sequence

Star sequence

Eca-Mir-181-P2c_3p* (predicted)

mirBase accession

None

Sequence

43- CCACCGGGGGAUGAAUGUCA -63

Get sequence