MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-181d
Paralogues Mmu-Mir-181-P1a  Mmu-Mir-181-P1b  Mmu-Mir-181-P1c  Mmu-Mir-181-P2a  Mmu-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr8: 84178720-84178781 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c)
Mir-181-P2c chr8: 84178720-84178781 [-] UCSC Ensembl
Mir-181-P1c chr8: 84178885-84178945 [-] UCSC Ensembl
Mir-23-P3 chr8: 84208527-84208585 [+] UCSC Ensembl
Mir-27-P3 chr8: 84208685-84208747 [+] UCSC Ensembl
Mir-24-P3 chr8: 84208839-84208896 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCUCAGGCCACAGCAAAGGUCACAAUUAACAUUCAUUGUUGUCGGUGGGUUGUGAGGAGGCAGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCCAAACAACACCAUCAGGG
Get precursor sequence
Structure
        10        20          30        40        50        60  
CUGCCUCAGGCCACAGCAAA--|      AUUA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       \
                      UCGGUGU    UGUAAGUAG G  GGCCACCCAG       G
GGGACUACCACAACAAACCGGG^      CAC-         G --          ACCGACG 
120       110       100         90        80          70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-181-P2c_5p

mirBase accessionMIMAT0004324
Sequence
0- AACAUUCAUUGUUGUCGGUGGGUU -24
Get sequence
Proposed targets microrna.org: MIMAT0004324
TargetScanVert: mmu-miR-181d-5p
miRDB: MIMAT0004324
Star sequence

Mmu-Mir-181-P2c_3p*

mirBase accessionMIMAT0017264
Sequence
42- CCACCGGGGGAUGAAUGUCA -62
Get sequence
Proposed targets TargetScanVert: mmu-miR-181d-3p
miRDB: MIMAT0017264