MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-27a
Paralogues Mmu-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr8: 84208685-84208747 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3)
Mir-181-P2c chr8: 84178720-84178781 [-] UCSC Ensembl
Mir-181-P1c chr8: 84178885-84178945 [-] UCSC Ensembl
Mir-23-P3 chr8: 84208527-84208585 [+] UCSC Ensembl
Mir-27-P3 chr8: 84208685-84208747 [+] UCSC Ensembl
Mir-24-P3 chr8: 84208839-84208896 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCCUAUCAUGACAACUGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAAGGUCCACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGGACCCCAUCUCCUCAGGCCGCUGC
Get precursor sequence
Structure
        10          20         30        40        50        60 
AAGCCUAUCAUGACAACU--  -| UGA  A  A         UG  U       AGGUCCAC 
                    GG CC   GG GC GGGCUUAGC  CU GUGAGCA        A
                    CC GG   CC CG CUUGAAUCG  GA CACUUGU        G
CGUCGCCGGACUCCUCUACC  A^ UCC  -  C         GU  -       GCUGAAAC 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-27-P3_5p*

mirBase accessionMIMAT0004633
Sequence
0- AGGGCUUAGCUGCUUGUGAGCA -22
Get sequence
Proposed targets microrna.org: MIMAT0004633
TargetScanVert: mmu-miR-27a-5p
miRDB: MIMAT0004633
Mature sequence

Mmu-Mir-27-P3_3p

mirBase accessionMIMAT0000537
Sequence
42- UUCACAGUGGCUAAGUUCCGC -63
Get sequence
Proposed targets microrna.org: MIMAT0000537
TargetScanVert: mmu-miR-27a-3p
miRDB: MIMAT0000537