MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues Ocu-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
VIYN01006261.1: 192288-192349 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCUGGACAGCACCGCCCGGCCCGAGGAGCAGGGCUUAGCUGCUUGUGAACAGGUUCCCCCCCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCUCUGGCCCCUACCUCCGCCUGCCUGCC
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Structure
        10          20        30        40        50        60 
CGCUGGACAGCACCGCCC--|   C    A  A         UG  U       GGUUCCCC 
                    GGCC GAGG GC GGGCUUAGC  CU GUGAACA        \
                    CCGG CUCC CG CUUGAAUCG  GA CACUUGU        C
CCGUCCGUCCGCCUCCAUCC^   U    C  C         GU  -       GCUGAACC 
120       110       100        90        80         70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-27-P3_5p*

mirBase accessionNone
Sequence
0- AGGGCUUAGCUGCUUGUGAACA -22
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Mature sequence

Ocu-Mir-27-P3_3p

mirBase accessionNone
Sequence
41- UUCACAGUGGCUAAGUUCCGC -62
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