| MirGeneDB ID | Tgu-Mir-27-P3 |
|---|
| Family name |
MIR-27 (all species) |
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| Seed |
UCACAGU |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
|
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| Paralogues |
Tgu-Mir-27-P2
|
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| Orthologues |
Aca-Mir-27-P3
Ami-Mir-27-P3
Bta-Mir-27-P3
Cfa-Mir-27-P3
Cmi-Mir-27-P3
Cpi-Mir-27-P3
Cpo-Mir-27-P3
Dno-Mir-27-P3
Dre-Mir-27-P3
Ete-Mir-27-P3
Gga-Mir-27-P3
Gja-Mir-27-P3
Gmo-Mir-27-P3
Hsa-Mir-27-P3
Lch-Mir-27-P3
Loc-Mir-27-P3
Mal-Mir-27-P3
Mdo-Mir-27-P3
Mml-Mir-27-P3
Mmu-Mir-27-P3
Oan-Mir-27-P3
Ocu-Mir-27-P3
Pbv-Mir-27-P3
Rno-Mir-27-P3
Sha-Mir-27-P3
Sto-Mir-27-P3a
Sto-Mir-27-P3b
Tni-Mir-27-P3
Xla-Mir-27-P3c
Xla-Mir-27-P3d
Xtr-Mir-27-P3
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(TaeGut1_add) |
30: 3316751-3316812 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGCUGGGGGUGUUUUGGGGGCUGGGGGGGCAGGGCUUAGCCCACCUGUGAACAGAGUCCAGCCGCGCCGUGUUCACAGUGGCUAAGUUCCGCCUCCCGCCCCCCUCGCCCGCACCGAGGGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGCUGGGGGUGUUUUGG----| UG A CAC GAGUCCA
GGGC GGGGGGC GGGCUUAGCC CUGUGAACA G
CCCG CCCUCCG CUUGAAUCGG GACACUUGU C
CGGGGAGCCACGCCCGCUCCC^ -- C U-- GCCGCGC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archives. |
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| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Tgu-Mir-27-P3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGCUUAGCCCACCUGUGAACA -23
Get sequence
|
|---|
| Mature sequence |
Tgu-Mir-27-P3_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UUCACAGUGGCUAAGUUCCGC -62
Get sequence
|
|---|
