MirGeneDB 3.0

MirGeneDB ID

Tgu-Mir-27-P3

Family name MIR-27 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Eca-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
30: 3316751-3316812 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3)
Mir-23-P3 30: 3316574-3316636 [+] UCSC Ensembl
Mir-27-P3 30: 3316751-3316812 [+] UCSC Ensembl
Mir-24-P3 30: 3317000-3317059 [+] UCSC Ensembl
Seed UCACAGU
Precursor
(pre-Mir +30nt flank)
UGCUGGGGGUGUUUUGGGGGCUGGGGGGGCAGGGCUUAGCCCACCUGUGAACAGAGUCCAGCCGCGCCGUGUUCACAGUGGCUAAGUUCCGCCUCCCGCCCCCCUCGCCCGCACCGAGGGGC
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Structure
        10            20        30        40        50        60 
UGCUGGGGGUGUUUUGG----|   UG       A          CAC         GAGUCCA 
                     GGGC  GGGGGGC GGGCUUAGCC   CUGUGAACA       G
                     CCCG  CCCUCCG CUUGAAUCGG   GACACUUGU       C
CGGGGAGCCACGCCCGCUCCC^   --       C          U--         GCCGCGC 
120       110       100          90        80          70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-27-P3_5p*

mirBase accessionNone
Sequence
0- AGGGCUUAGCCCACCUGUGAACA -23
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Mature sequence

Tgu-Mir-27-P3_3p

mirBase accessionNone
Sequence
41- UUCACAGUGGCUAAGUUCCGC -62
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