| MirGeneDB ID | Lch-Mir-27-P1 |
|---|---|
| Family name | MIR-27 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-27-P2 Lch-Mir-27-P3 Lch-Mir-27-P4 |
| Orthologues | Dre-Mir-27-P1 Gmo-Mir-27-P1 Loc-Mir-27-P1 Mal-Mir-27-P1 Pma-Mir-27-o1 Tni-Mir-27-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126762.1: 1808447-1808510 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-27-P1) |
Mir-24-P1
JH126762.1: 1801884-1801943 [-]
Ensembl
Mir-27-P1 JH126762.1: 1808447-1808510 [-] Ensembl Mir-23-P1 JH126762.1: 1811296-1811360 [-] Ensembl |
| Seed | UCACAGU |
| Precursor (pre-Mir +30nt flank) |
CAUCUUCUUCCAUGGAGCUCUGAAAGAGACAGGACUUAGCUAGCCUUGUGAACAGAUCUUUGAUAAGCACAUGUUCACAGUGGCUAAGUUCUGCCACUUUGGAGCAAGUCAGCUGGAACCAAUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAUCUUCUUCCAUGGAG---| G AGA GCC GAUCUUUG CUCU AAAG CAGGACUUAGCUA UUGUGAACA \ GAGG UUUC GUCUUGAAUCGGU GACACUUGU A GUAACCAAGGUCGACUGAAC^ - ACC --- ACACGAAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-27-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGACUUAGCUAGCCUUGUGAACA -24
Get sequence
|
| Mature sequence | Lch-Mir-27-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
43- UUCACAGUGGCUAAGUUCUGC -64
Get sequence
|
