| MirGeneDB ID | Mal-Mir-27-P1 |
|---|
| Family name |
MIR-27 (all species) |
|---|
| Seed |
UCACAGU |
|---|
| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
Mal-Mir-27-P2a
Mal-Mir-27-P2b
Mal-Mir-27-P3
Mal-Mir-27-P4a
Mal-Mir-27-P4b
|
|---|
| Orthologues |
Dre-Mir-27-P1
Gmo-Mir-27-P1
Lch-Mir-27-P1
Loc-Mir-27-P1
Pma-Mir-27-o1
Tni-Mir-27-P1
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884702.1: 3701989-3702051 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACGUGUUUGUCCAGAGUUUGGUUGAAGUGCAGGACUUAGCUUGCUCCGUGAACAGUUCAGUGAAAACCUGUGUUCACAGUGGCUAAGUUCCGCUCCUCACAAGCCUCUCCAGCGUUUAACUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACGUGUUUGUCCAGAGUUU ---| AGU A U CC GUUCAGU
GGU UGA GC GGACUUAGCU GCU GUGAACA G
CCG ACU CG CUUGAAUCGG UGA CACUUGU A
CCUCAAUUUGCGACCUCU- AAC^ CCU C - -- GUCCAAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Mal-Mir-27-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGACUUAGCUUGCUCCGUGAACA -24
Get sequence
|
|---|
| Mature sequence |
Mal-Mir-27-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUCCGC -63
Get sequence
|
|---|
