| MirGeneDB ID | Mal-Mir-27-P4b |
|---|
| Family name |
MIR-27 (all species) |
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| Seed |
UCACAGU |
|---|
| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
Mal-Mir-27-P1
Mal-Mir-27-P2a
Mal-Mir-27-P2b
Mal-Mir-27-P3
Mal-Mir-27-P4a
|
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| Orthologues |
Cmi-Mir-27-P4
Gmo-Mir-27-P4b
Lch-Mir-27-P4
Loc-Mir-27-P4
Sto-Mir-27-P4
Tni-Mir-27-P4b
Xtr-Mir-27-P4
|
|---|
| Node of Origin (locus) |
Clupeocephala
|
|---|
| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884702.1: 2269816-2269878 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUCCUUCUGAGAUGACUUUUCUAAAGAUGCAGAGCUUAGCUCAUUAGUGAGCAUUGAACCAAACAGGAAUUGUUCACAGUGGCUAAGUUCAGUGUCUGACAUGAAAGAAUGAGCUGCCCACGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUCCUUCUGAGAUGACUU UAA--| A U A AUUGAACCA
UUC AGAUGC GAGCUUAGC CAUU GUGAGC \
AAG UCUGUG CUUGAAUCG GUGA CACUUG A
UGCACCCGUCGAGUAAGA UACAG^ A - - UUAAGGACA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
|---|
Tissue expression
|
|
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| Star sequence |
Mal-Mir-27-P4b_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGCUUAGCUCAUUAGUGAGC -22
Get sequence
|
|---|
| Mature sequence |
Mal-Mir-27-P4b_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUCAGU -63
Get sequence
|
|---|
